PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g125520.1
Common NameMTR_4g125520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 308aa    MW: 34938.3 Da    PI: 8.2143
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g125520.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l d++k++G g W+  +++ g++R++k+c++rw++yl
  Medtr4g125520.1 14 RGAWTAHEDKILSDYIKLHGEGKWRNLPKRAGLRRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding49.87.7e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Medtr4g125520.1  67 RGNISSDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                      78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.635961IPR017930Myb domain
SuperFamilySSF466891.33E-2712108IPR009057Homeodomain-like
SMARTSM007177.7E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-141461IPR001005SANT/Myb domain
CDDcd001671.02E-91661No hitNo description
PROSITE profilePS5129424.09662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2365116IPR009057Homeodomain-like
SMARTSM007178.2E-1566114IPR001005SANT/Myb domain
PfamPF002494.7E-1467112IPR001005SANT/Myb domain
CDDcd001677.93E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRSPCCAKE GLNRGAWTAH EDKILSDYIK LHGEGKWRNL PKRAGLRRCG KSCRLRWLNY  60
LRPDIKRGNI SSDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVKDLQ  120
QQNTNNSTPK NAKIAHKQNN PKPMVPNSHV VRTKATKCSK VLFMNSLPNS STMQNLQNKV  180
ETETKTKPSM HVDSRDSDSM SNNQMENGNE FLSFSDAKKG LSTDLLVDFN MGDHDISLSE  240
LLNSDFSTAC NFDYNELLSP CSDQTPMFSD EILKNWTECS FVDEKNVTNN LHYFTSFLES  300
SEDVLGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g125520.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1578210.0JN157821.1 Medicago truncatula tannin-related R2R3 MYB transcription factor (Myb14) gene, Myb14-2 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458423.10.0transcription factor MYB8
TrEMBLA0A072URN40.0A0A072URN4_MEDTR; Myb transcription factor
STRINGXP_004507986.11e-152(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-68MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]