PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g121460.1
Common NameMTR_4g121460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 340aa    MW: 38531.5 Da    PI: 5.0176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g121460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l d+++++G g+W++ ++  g+ R++k+c++rw +yl
  Medtr4g121460.1 14 KGRWTAEEDKILTDYIQEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.23.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e++v++++ lG++ W+ Ia +++ gRt++++k++w+++l
  Medtr4g121460.1  67 RGNITPQEEEIIVKLHAVLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.196961IPR017930Myb domain
SuperFamilySSF466893.43E-2911108IPR009057Homeodomain-like
SMARTSM007172.9E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221568IPR009057Homeodomain-like
CDDcd001675.48E-101661No hitNo description
PROSITE profilePS5129425.57362116IPR017930Myb domain
SMARTSM007172.9E-1666114IPR001005SANT/Myb domain
PfamPF002499.0E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2569116IPR009057Homeodomain-like
CDDcd001671.44E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRAPCCEKI GLKKGRWTAE EDKILTDYIQ EHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDVKRGNI TPQEEEIIVK LHAVLGNRWS VIAGHLPGRT DNEIKNYWNS HLRRKIYCFM  120
KSLNESFSPI DLAAVNLAAA SKRRAGRGAA PRQDQNNKYN KKEVLEVQLP TLLHTRKEEE  180
LQQGYNNTNN SSCPNMNELV DNLEPYEWLD DEIIKLSYMF ESGVLVSPDH ENNNNNNNNN  240
NININVTNDD NNILDSDFGV LVGNNDGGSG GVWSSSNGAE SGECNSSVNS VYEYQWPDMH  300
LEGSCVQSYN QQWDLCDQQG QDVNCFWDAS NYQENGFYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g121460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737344e-64AB573734.1 Lupinus albus LaMYB11 mRNA for R2R3-MYB transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609725.10.0myb-related protein Hv1
TrEMBLG7JMQ70.0G7JMQ7_MEDTR; Myb transcription factor
STRINGAES919220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-72myb domain protein 12
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]