PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g104230.2
Common NameMTR_4g104230
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 278aa    MW: 31683.2 Da    PI: 8.6475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g104230.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00012111134123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C++C+ksF+    L +H+ + H
  Medtr4g104230.2 111 WRCGYCKKSFREEKFLDQHLDNrH 134
                      58*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.787111134IPR007087Zinc finger, C2H2
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKKVTVIVSI LLFSILRFQP FVSSSPLLYG NQVYEESSGE SRNLNQEHEH APEVHCSRER  60
SRVASKVIEE YLTPFVEKEN YQLSRKCRLH PENDMFRDQE EHRIYLDRNE WRCGYCKKSF  120
REEKFLDQHL DNRHCNLLNL SHGKCLADLC GALHCDAVTN SKSSRSKCNP AAAARNRHLC  180
ESLADSCFPI SGGLSASRLH ELFLHQFCDA HSCSGKHKPF SRGGKGQGSF FRLAAGALIL  240
VLLPVFYLFI YLIQCDMNGR TQDLRRISKS GWKAKPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g104230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457701.10.0uncharacterized protein LOC11407962 isoform X1
TrEMBLA0A072UPU50.0A0A072UPU5_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004515836.11e-175(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]