PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g100450.1
Common NameMTR_4g100450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 308aa    MW: 34544.3 Da    PI: 6.5364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g100450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-20153203255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+f ta eAaka++ a+ +++g
  Medtr4g100450.1 153 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETAIEAAKAYDSAAFRMRG 203
                      69*******.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.07E-31152211No hitNo description
SuperFamilySSF541717.19E-22153213IPR016177DNA-binding domain
SMARTSM003803.5E-38153217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-32153212IPR001471AP2/ERF domain
PROSITE profilePS5103224.065153211IPR001471AP2/ERF domain
PfamPF008472.3E-14153203IPR001471AP2/ERF domain
PRINTSPR003672.4E-13154165IPR001471AP2/ERF domain
PRINTSPR003672.4E-13193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MANFEEVSAL KRIKFHLLGE FSPLPSPIST PCFDFDFDFE FQTNQTASQS ESNSSTSISM  60
NQYFTNLLET DAQIPLFEFD TKPQMMEHES PKALTSSHPF SQSQRTTEKK PKLARKPSLE  120
IALPKKTEWI QFSKPDPKPE AVVQKPEAVK KQHYRGVRQR PWGKFAAEIR DPNKRGSRVW  180
LGTFETAIEA AKAYDSAAFR MRGSKAILNF PLEVNAAAAT ETAVTAVETT GDGNKKRCRE  240
EEEEEVVEVK PVVKKEKITE YDMSCFKEMP LTPSFWTGLW DGDVKGMSSV SPLSPLSSFC  300
LSPLVVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-33150217269ATERF1
3gcc_A6e-33150217269ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.164400.0glandular trichome| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g100450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1536430.0AC153643.25 Medicago truncatula chromosome 8 clone mth2-109d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608663.10.0ethylene-responsive transcription factor 6
TrEMBLG7JHN90.0G7JHN9_MEDTR; Ethylene response factor
STRINGAES908600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.15e-51ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]