PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g098870.1
Common NameMTR_4g098870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 595aa    MW: 66520.3 Da    PI: 5.6851
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g098870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.55.3e-27349403156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH++Fv+aveqL G+++A+P++il+lmkv+gLt+++v+SHLQk+R++
  Medtr4g098870.1 349 KMKVDWTPELHKKFVKAVEQL-GIDHAIPSRILDLMKVEGLTRHNVASHLQKFRMH 403
                      5689*****************.********************************96 PP
2Response_reg27.71.4e-10591651109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+ + +++  + +r+ le  +y +v  + d  eal  +  + +d+++ ++ ++ +    G+++l+   +++ +lp i+ + ++  +++ +++ 
  Medtr4g098870.1  59 VLLLEGDNTSVSEIRVKLEAMDY-NVSIFCDVNEALSAVssRPEDFHIAIVEVSSSScEGGFRFLE---NAK-DLPTIMTSNSDCLNTMMKCIA 147
                      67778888888999999******.***************555555999999999999445555554...444.799999998888********* PP

                      TTESEEEESS--HHHHHH CS
     Response_reg  92 aGakdflsKpfdpeelvk 109
                      +Ga +flsKp ++++l++
  Medtr4g098870.1 148 LGAVEFLSKPLSEDKLRN 165
                      ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.9E-1555206No hitNo description
SuperFamilySSF521721.2E-1455173IPR011006CheY-like superfamily
SMARTSM004480.004457167IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.75358171IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.9E-759166IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.65E-760170No hitNo description
PROSITE profilePS5129414.485346405IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-26347405IPR009057Homeodomain-like
SuperFamilySSF466891.34E-17348406IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-24349404IPR006447Myb domain, plants
PfamPF002498.1E-7352400IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MPLCTVISIC QLAIWNLYNH LDKKELDVDE SLRKDAKPAM VCTANDLQEW KDFPKGLKVL  60
LLEGDNTSVS EIRVKLEAMD YNVSIFCDVN EALSAVSSRP EDFHIAIVEV SSSSCEGGFR  120
FLENAKDLPT IMTSNSDCLN TMMKCIALGA VEFLSKPLSE DKLRNIWQHV VHKAFNAGVS  180
ALSESLKPVK ESVASILQIQ TDNEQNESKA SVELEQVLRS SDNDHHEHYP APSTPQLKQV  240
GRLLDDGDCQ EQTNCSTEKE SGEHDGESKS VEITCENLNA ESITQQTKSE ATLVQKEEEE  300
FADASKCESV VSPQLPNVKV LNNSESNTTS ANKVVVRSHK CEIKANRKKM KVDWTPELHK  360
KFVKAVEQLG IDHAIPSRIL DLMKVEGLTR HNVASHLQKF RMHKRHILPK QEDRKWLNPR  420
DPTQRNYCLQ RPIMPGPPSY YSNHTLPPLA PLYPMWGQSG TQTAGMQVWG HSGYPVWQPT  480
ESWHWKPFPG MHPDAWGCPV LPPPQPPCYS YSQDIPAVSN ANAMDYTFSM MLHSSFDDYP  540
AEEVIDNVVK EAISKPWLPL PIGLKPPSTD SVLAELSRQG ISSIPPSYNG SIPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16347402358ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.99510.0flower| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g098870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-45AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457528.10.0two-component response regulator-like APRR2
RefseqXP_024638401.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-139APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A072UR720.0A0A072UR72_MEDTR; Two-component response regulator-APRR2-like protein
STRINGXP_004508999.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-138ARR-B family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]