PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g098035.1 | ||||||||
Common Name | MTR_4g098035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 38447.8 Da PI: 5.6886 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.4e-11 | 173 | 217 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++ +af L +l+P + kK +Ka++L ++++Ik+L Medtr4g098035.1 173 HIMVERKRREKLGQAFIALATLIPDL-----KKKDKASVLADTIKHIKEL 217 99************************.....89***************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.087 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-14 | 172 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-10 | 173 | 222 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-14 | 173 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-9 | 173 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-11 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MEQINNTPMN ISADSSLLSD LEKVGEYIFD EECYLNLLDA DVVEEFLSRD MASVIAFEEQ 60 RETLQQCLTT ECISTTLSET FNGETSFESF DFDFENPTKK LKFFDRSDNI TKNFSQQLSA 120 SPSTFQSSQI PSLPNLGNTH FSALQTSKES SKNQNVETKT SQSKRSSAHV KDHIMVERKR 180 REKLGQAFIA LATLIPDLKK KDKASVLADT IKHIKELKER LAILEEVGKN TKEDQSMMVC 240 NKPDHCCETE SVGDGTAIKV AAKVSGKKML IRIHCQKHDG LLVKVITEIQ SFQLLVVNNR 300 ILAFGDSFHD ITVIAEIGEG YNLTIKELVR NLRMAALKFM SS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 176 | 181 | ERKRRE |
2 | 177 | 182 | RKRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g098035.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013442262.2 | 0.0 | transcription factor bHLH19 | ||||
Refseq | XP_013457519.1 | 0.0 | transcription factor bHLH19 | ||||
TrEMBL | A0A072V0A3 | 0.0 | A0A072V0A3_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein | ||||
STRING | AES90806 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11069 | 12 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22760.1 | 5e-39 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g098035.1 |
Entrez Gene | 25493546 |
Publications ? help Back to Top | |||
---|---|---|---|
|