PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097920.1
Common NameMTR_4g097920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 329aa    MW: 37412.2 Da    PI: 7.3428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13154200354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + h ++ErrRR+++ ++f  L +llP +     kK++Ka+iLe A++++k+L
  Medtr4g097920.1 154 QDHVMAERRRREKLSQRFISLSSLLPGL-----KKMDKATILEDAIKHLKQL 200
                      6799************************.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11154200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-16155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-12156205No hitNo description
SuperFamilySSF474599.42E-16156219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-14157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MIQISSTNYM PEFGLMEDTT LFSDHEYQMD SYAFQFDDMA YFKSFSESPQ ESTYSSHTNI  60
NNKRIHSEST QNSSFPTQSP DQSVASATPP TKLLKASPKI ISFDYSNNDS KVKKPKTEIG  120
YGENLNFGSV ISQGDYYKRE NKVSAVNRNP IQAQDHVMAE RRRREKLSQR FISLSSLLPG  180
LKKMDKATIL EDAIKHLKQL NERVKTLEEH VADKKVESAV FMKRSILFEE DDRSSCDENS  240
DQSLSKIEAR VSGKDMLIRI HGDKHCGRTA TAILNELEKH HLSVQSSSIL PFGNNYLDIT  300
IVAQMNKEYC LTMKDLIRSI SQVLRQLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERRRRE
2160165RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.120160.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1418620.0AC141862.54 Medicago truncatula chromosome 8 clone mth2-33n1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608591.10.0transcription factor bHLH19
TrEMBLG7JGD50.0G7JGD5_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES907880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-52bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]