PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097570.2
Common NameMTR_4g097570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 294aa    MW: 33581.5 Da    PI: 7.9847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097570.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  Medtr4g097570.2 14 RGPWSPEEDSKLKAYIQQHGTGgNWIALPKKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding39.21.6e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Medtr4g097570.2  69 GSFSEEEDNIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.253962IPR017930Myb domain
SuperFamilySSF466897.35E-2711109IPR009057Homeodomain-like
SMARTSM007172.8E-131364IPR001005SANT/Myb domain
PfamPF002495.1E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-251569IPR009057Homeodomain-like
CDDcd001675.56E-101662No hitNo description
PROSITE profilePS5129422.13963117IPR017930Myb domain
SMARTSM007173.4E-1167115IPR001005SANT/Myb domain
PfamPF002492.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2470117IPR009057Homeodomain-like
CDDcd001675.10E-770110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKAYIQ QHGTGGNWIA LPKKIGLKRC GKSCRLRWLN  60
YLRPNLKHGS FSEEEDNIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLTK  120
QRKEQQSQAR RVFNQNQEIK RESGNSVWPI GFIGQTPNYW PTQHNSFPNI PVTNPSSIQN  180
YNLKEVEFYD DHQLQPVNAN NNCQYPCDIY FQQDQLYCPS TMNSINSAGL TYVNQQQLDG  240
SISTSTESSS WGDMSSLIHS PLASDYEGGH QQTMIQEDFT FDESMFYGMI QTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141197110B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.86280.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457511.10.0transcription factor RAX3 isoform X2
SwissprotQ9M2Y91e-81RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A072UPC80.0A0A072UPC8_MEDTR; Myb transcription factor
STRINGXP_004509047.11e-127(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.18e-77myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]