PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g097570.1 | ||||||||
Common Name | MTR_4g097570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 33680.7 Da PI: 7.9847 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W + ++++ ++R++k+c++rw++yl Medtr4g097570.1 14 RGPWSPEEDSKLKAYIQQHGTGgNWIALPKKIVgLKRCGKSCRLRWLNYL 63 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 70 | 112 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Medtr4g097570.1 70 GSFSEEEDNIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 112 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.174 | 9 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-26 | 11 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 14 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-24 | 15 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.10E-9 | 16 | 63 | No hit | No description |
PROSITE profile | PS51294 | 22.139 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-11 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-11 | 70 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.89E-7 | 71 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDSKLKAYIQ QHGTGGNWIA LPKKIVGLKR CGKSCRLRWL 60 NYLRPNLKHG SFSEEEDNII CSLYVNIGSR WSIIAAQLPG RTDNDIKNYW NTKLKKKLLT 120 KQRKEQQSQA RRVFNQNQEI KRESGNSVWP IGFIGQTPNY WPTQHNSFPN IPVTNPSSIQ 180 NYNLKEVEFY DDHQLQPVNA NNNCQYPCDI YFQQDQLYCP STMNSINSAG LTYVNQQQLD 240 GSISTSTESS SWGDMSSLIH SPLASDYEGG HQQTMIQEDF TFDESMFYGM IQTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 14 | 120 | 7 | 110 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8628 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g097570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457512.1 | 0.0 | transcription factor RAX3 isoform X1 | ||||
Swissprot | Q9M2Y9 | 7e-80 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A072UR62 | 0.0 | A0A072UR62_MEDTR; Myb transcription factor | ||||
STRING | XP_004509047.1 | 1e-129 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-75 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g097570.1 |
Entrez Gene | 25493540 |
Publications ? help Back to Top | |||
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