PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094588.1
Common NameMTR_4g094588
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 339aa    MW: 37901.5 Da    PI: 6.9132
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094588.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33178235259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers edp++v++tYeg+Hnh+
  Medtr4g094588.1 178 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHP 235
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-34162237IPR003657WRKY domain
SuperFamilySSF1182901.31E-29169237IPR003657WRKY domain
PROSITE profilePS5081133.029172237IPR003657WRKY domain
SMARTSM007742.1E-38177236IPR003657WRKY domain
PfamPF031069.4E-26178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSDEPKPYFQ DFMLDQGSNM YSCEKQFSTF HNLDSSQPNY FDPSSYNMSF TESLQGGNMD  60
HYNSPLATSF GVLSPSSSEV FSSVDQGNQK PSAGELGGGD QTLATLNSSI SNSSSSEAGG  120
VEEEDSGKRK KNIGQVKEEP GQESSKNGNN KVDKKKGEKK QKEPRFAFMT KSEVDQLEDG  180
YRWRKYGQKA VKNSPYPRSY YRCTTQKCTV KKRVERSYED PTTVITTYEG QHNHPVPTSL  240
RGNAAAMFTP SNLLSTPTPF SYGSNFPQDL LLHMHHHNTF NITQPTTHTT NNVAGSVYSH  300
NNINNSFLQQ YQQQLPPDQY GLLQDIVPSM FLNRTNHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-29167237777Probable WRKY transcription factor 4
2lex_A6e-29167237777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.166000.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457329.10.0probable WRKY transcription factor 28
TrEMBLA0A072UZW80.0A0A072UZW8_MEDTR; Putative transcription factor WRKY family
STRINGXP_004504707.11e-110(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.18e-51WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]