PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088900.1
Common NameMTR_084s0012, MTR_4g088900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 211aa    MW: 24509.9 Da    PI: 6.5117
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.58.5e-33341292102
                      HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                      Fl k+y+++e     e+  +++sw+e+gn fvv+ + ef++  LpkyFkh+nf+SF+RQLn+YgFkk+++++         weF+h++F+kg +
  Medtr4g088900.1  34 FLLKTYDLVEqgieGEDGIKIVSWNEEGNGFVVWSPAEFSELTLPKYFKHNNFSSFIRQLNTYGFKKISSKR---------WEFQHEKFQKGCR 118
                      99*******95555458889*************************************************999.........************* PP

                      XXXXXXXXXXX CS
     HSF_DNA-bind  92 ellekikrkks 102
                      ++l +i rkk 
  Medtr4g088900.1 119 HMLVEISRKKC 129
                      ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.5E-4130127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-2731127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.5E-3431122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-2934127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-113861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-117688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-1189101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSGNVMELNF GSLDQFSSDQ NGVSLKPLRC PAPFLLKTYD LVEQGIEGED GIKIVSWNEE  60
GNGFVVWSPA EFSELTLPKY FKHNNFSSFI RQLNTYGFKK ISSKRWEFQH EKFQKGCRHM  120
LVEISRKKCE PSVFPQYLKS CSEENAMTNN SSVEEDNNNH ELLMEENKNL KKERLELQMQ  180
IAECKALEMK LLECLSQYMD NRQNKVRRLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-162712714120Heat shock factor protein 1
5d5u_B2e-162712723129Heat shock factor protein 1
5d5v_B2e-162712723129Heat shock factor protein 1
5d5v_D2e-162712723129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088900.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457050.11e-155heat stress transcription factor B-2a
TrEMBLG7ZZ891e-153G7ZZ89_MEDTR; Heat shock transcription factor
STRINGAES845271e-154(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-36heat shock transcription factor B3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]