PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g088015.1 | ||||||||
Common Name | MTR_4g088015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 443aa MW: 50039.9 Da PI: 9.5133 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 221 | 267 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTt Ed lv++v+ +G + W+ Ia++m gR +kqc++rw+++l Medtr4g088015.1 221 KGQWTTNEDRVLVQLVNHFGLRKWSQIAKYMK-GRIGKQCRERWNNHL 267 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 60 | 5.3e-19 | 273 | 315 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eEd++l++a+k G++ W+ Ia++m+ gRt++++k++w+ Medtr4g088015.1 273 KDSWTEEEDKILIEAHKIVGNK-WAEIAKRMQ-GRTENSIKNHWN 315 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.18 | 216 | 271 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-30 | 218 | 314 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-14 | 220 | 269 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 221 | 267 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 222 | 275 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.20E-13 | 224 | 267 | No hit | No description |
PROSITE profile | PS51294 | 21.005 | 272 | 322 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-17 | 272 | 320 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-17 | 273 | 315 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-14 | 275 | 318 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 276 | 320 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MESDLSFARK SPNLSMDLPK SPSMKSAIST MVPSQSGPTF SPPPSHCTTY LYQNRCNQFK 60 EHPLNKAYHH SSFSRVAPSS ISSFPMTPTP SYKDAYTSGS QSEFISARNP MIFAPNYNKM 120 EVMHGPVNSS KGTRELSTNN LFQYGETSQY RVSPSLSPSL VSDGHPSVSV KSELQGGLSC 180 NGGIGNNSRE NNQRHIHSDQ NRQQTNQNNS EIRLKDPNII KGQWTTNEDR VLVQLVNHFG 240 LRKWSQIAKY MKGRIGKQCR ERWNNHLRPD IKKDSWTEEE DKILIEAHKI VGNKWAEIAK 300 RMQGRTENSI KNHWNATKRR HNTKRKNRSN SSKGKLLLKY IMEVNDAKEA EKELMTNSTS 360 VMKFGNHPNF ESSESDFSSE GLVNPNEEID GYAPMMFNGD DGMASGSGTT TSYDFGTYGM 420 EFFPEVPMKQ EIDFMGMIYR NP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-45 | 217 | 320 | 3 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g088015.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456909.1 | 0.0 | transcription factor MYB98 | ||||
TrEMBL | A0A072UYL7 | 0.0 | A0A072UYL7_MEDTR; SWI3, ADA2, N-CoR and tfiiib DNA-binding domain protein | ||||
STRING | AES78630 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 1e-52 | myb domain protein 118 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g088015.1 |
Entrez Gene | 25493049 |
Publications ? help Back to Top | |||
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