PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g086165.1
Common NameMTR_4g086165
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 209aa    MW: 23625.6 Da    PI: 6.5273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g086165.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.94e-2181130255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    r  r++lg+f taeeAa+a+++a+ +++g
  Medtr4g086165.1  81 KYRGVRQRP-WGKWAAEIRDPR----RaVRVWLGTFTTAEEAARAYDNAAIEFRG 130
                      8********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3981144IPR001471AP2/ERF domain
CDDcd000181.69E-3481138No hitNo description
Gene3DG3DSA:3.30.730.102.7E-3381139IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2381139IPR016177DNA-binding domain
PROSITE profilePS5103225.35681138IPR001471AP2/ERF domain
PfamPF008473.2E-1481130IPR001471AP2/ERF domain
PRINTSPR003674.9E-128293IPR001471AP2/ERF domain
PRINTSPR003674.9E-12104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNYAFSTTTL TSDQELSVIV AALTNVVSGS TSTVGLDRIV QPVNIETCRE CNIAGCLGCN  60
FFPEEKKQKQ KQKQKRAKNN KYRGVRQRPW GKWAAEIRDP RRAVRVWLGT FTTAEEAARA  120
YDNAAIEFRG PRAKLNFPLV DESLKRTVED PELVVHVKDE EMQIETTMGF GNNTTECDFW  180
DSIGEEADFQ QLMRFMDSSH SRTGNTFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2477139164ATERF1
3gcc_A8e-2477139164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146ESLKRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.242570.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g086165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1483480.0AC148348.6 Medicago truncatula clone mth2-28b4, complete sequence.
GenBankAC2255380.0AC225538.2 Medicago truncatula clone mth2-68m14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456881.21e-157ethylene-responsive transcription factor ERF109
SwissprotQ9SZ067e-37EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A396I9C51e-155A0A396I9C5_MEDTR; Putative transcription factor AP2-EREBP family
STRINGAES901741e-143(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-32redox responsive transcription factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  3. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  4. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  5. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]