PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g084550.1

Common Name

MTR_4g084550

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

WOX

Protein Properties

Length: 185aa MW: 21012.7 Da PI: 8.4059

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g084550.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.5	8.1e-22	62	122	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+ ql +Leel+++ ++psae+++++A++l +++ ++V++WFqN++a+e++ Medtr4g084550.1 62 SSRWSPTPVQLLVLEELYRQgMKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 122 58***************99************************************97 PP
2	Wus_type_Homeobox	115.5	2.5e-37	61	124	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Medtr4g084550.1 61 PSSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 124 689***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-14	57	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.612	58	123	IPR001356	Homeobox domain
SMART	SM00389	3.9E-8	60	127	IPR001356	Homeobox domain
CDD	cd00086	1.89E-6	61	124	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.1E-10	63	122	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-19	63	122	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSDSFCSFLS ATSNSNHNSH APSKITSIVQ PYCICTHCNH LLPFNHHLAE QGTSNIMHPQ 60 PSSRWSPTPV QLLVLEELYR QGMKTPSAEQ IQQIASQLRQ FGKIEGKNVF YWFQNHKARE 120 RQKRRRLEME ETTEDKKEKE KYVMGNSKKQ EGAETGGGVK ETKKWATTSN CSEQAEVCNF 180 SCLC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	126	KRRRL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269\|PubMed:14711878}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g084550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505406.2	1e-84	WUSCHEL-related homeobox 6 isoform X2
Refseq	XP_012572552.1	1e-84	WUSCHEL-related homeobox 6 isoform X1
Swissprot	Q6X7K0	4e-35	WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBL	A0A072UYB2	1e-136	A0A072UYB2_MEDTR; Wuschel-related homeobox protein
STRING	XP_004505406.1	8e-89	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15154	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	3e-35	WUSCHEL related homeobox 1

Link Out ? help Back to Top
Phytozome	Medtr4g084550.1
Entrez Gene	25492991

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Guan C, et al. Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis. Curr. Biol., 2017. 27(19): p. 2940-2950.e4 [PMID:28943086]