PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g079500.1
Common NameMTR_096s0022, MTR_4g079500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 329aa    MW: 37379.3 Da    PI: 5.6374
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g079500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11196243552
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  ++  l
  Medtr4g079500.1 196 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYL 243
                      899**********************************88887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-14192256IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.726194246IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-13196247No hitNo description
PfamPF001701.9E-9196243IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.41E-11196250No hitNo description
CDDcd147034.43E-23197247No hitNo description
PROSITE patternPS000360199214IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAQLPPKVPI PNMTPTWPEF SSHQKMPNLK TISPSNASNF SNNQQNPSWV DEFLDFSSTR  60
RGAHRRSASD SVTFIEASMM EHCRRRDGDN EFERFDDEQL MSMFSVDEVS RNNTMMPPPA  120
TLSSNSNPST PSDHNSINDE KEEDEEEKMQ QKQLKHESDE DEIGECKQEN GGVVNDEDDN  180
NGNTTTFSSP KITDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ AEVSVLSPRV  240
AYLDHQRLLL NVDNSAIKQR IAALAQDKIF KDAHQEALKR EIERLRQVYH QQQNIKNNAT  300
AAAVSPSPSP KPRCDNDTHI ENEHLINV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.11000.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g079500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400340.0AC140034.14 Medicago truncatula clone mth2-17g19, complete sequence.
GenBankAC1716190.0AC171619.9 Medicago truncatula clone mth2-160a1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607550.10.0basic leucine zipper 34
SwissprotQ9M2K41e-103BZP61_ARATH; Basic leucine zipper 61
TrEMBLG8A0050.0G8A005_MEDTR; BZIP family transcription factor
STRINGAES847930.0(Medicago truncatula)
STRINGAES897470.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-89bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]