PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g077970.1
Common NameMTR_4g077970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 494aa    MW: 54955.3 Da    PI: 4.961
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g077970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.83e-37131052103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw +n+n+fvvl++++f+k++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll+
  Medtr4g077970.1  13 FLSKTYDMVDDSSTESIVSWGKNNNTFVVLNSTDFSKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHEGFLRGQKHLLK 97 
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  Medtr4g077970.1  98 NINRRKST 105
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-589102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3811102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MTAGIANYVL PPFLSKTYDM VDDSSTESIV SWGKNNNTFV VLNSTDFSKH ILPKYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFAHEGFLR GQKHLLKNIN RRKSTHANGN NQQLSKPQNP  120
PVGSCVEVGK FGLDEEVERL KRDKNVLMQE LVKLRQQQQS TDNQLVNVGQ RVQVMEQRQQ  180
QMMSFLAKAM NSPGFMAQFS QQQNESNRHV TAGKKRRLQG QEEDSLATKN PHNPLDGRVV  240
KYQPSINEAA KTLFNQMLQM NSSARVDSSI KNLDAFLIDD VPSAIPLDSS SSSTQVSGVT  300
LSDVSPISGQ SCIAVESQFP VSCMTNSMSE VQSSPAVLTD CVKTAEFPEF TTAHQDNILD  360
FGEVHGLATE SSFMNPDQNF VGSVGENDEE LDVISAVLDG TQSLEADAFS SDANENSKLP  420
GINDEFWEQF FRPSPLTGDT DEVKGSSLGY GLTKDQELSL AKKIQQEKMD KIQHMDHLTQ  480
QMELLASDST LCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-26310512123Heat shock factor protein 1
5d5u_B4e-26210220129Heat shock factor protein 1
5d5v_B4e-26210220129Heat shock factor protein 1
5d5v_D4e-26210220129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.268590.0glandular trichome
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g077970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1439210.0BT143921.1 Medicago truncatula clone JCVI-FLMt-20B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638164.10.0heat stress transcription factor A-1e
SwissprotQ84T611e-141HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLG7JSS30.0G7JSS3_MEDTR; Heat shock transcription factor A3
STRINGAES896300.0(Medicago truncatula)
STRINGAES896390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-119heat shock transcription factor A1E
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]