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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Medtr4g077760.1 |
| Common Name | MTR_4g077760 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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| Family |
GRAS |
| Protein Properties |
Length: 556aa MW: 61509.9 Da PI: 4.9088 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Medtr4g077760.1 | genome | Mt | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 348.6 | 9.8e-107 | 191 | 555 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
++L+e+A +++++ ++a ++L++l++ s++g+p+qR+ +yf +AL ++++ +++++s++s+++ +e + ++k++++++P+ kf+h
Medtr4g077760.1 191 LKTLTEIASLIETQKPNQAIETLTHLNKSISQNGNPNQRVSFYFSQALTNKITA-----QSSIASSNSSSTTWEELTLSYKALNDACPYSKFAH 279
679**************************************************9.....445555566666689999***************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
ltaNqaIlea+eg++ +Hi+Df+i qG+QW+aLlqa+a+R++g+p s+Ri g+ +++ g ++++tg+rL++fA+ lg++fef++ + + +
Medtr4g077760.1 280 LTANQAILEATEGSNNIHIVDFGIVQGIQWAALLQAFATRSSGKPnSVRISGIPAMALGtsPVSSISATGNRLSEFAKLLGLNFEFTP-ILTPI 372
*****************************************77776*********998898999************************.799** PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpres 279
e l+ +++ ++p+EalaVn++lql++llde++++ + + L+l ksl+Pk+v++ e ea++ ++ F+erf a++y++a+f+sle +++ +s
Medtr4g077760.1 373 ELLDESSFCIQPDEALAVNFMLQLYNLLDENTNSVE---KALRLAKSLNPKIVTLGEYEASLtTRVGFVERFETAFNYFAAFFESLEPNMALDS 463
****************************98888777...9**********************8889**************************** PP
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvS 371
er vE llgr+i v+ ++ r+e +e+W+ +e++GF++v ls++a +qak ll +++ s y++ e++ +++ l Wkd pL++vS
Medtr4g077760.1 464 PERFQVESLLLGRRIDGVIGVRE-----RMEDKEQWKVLMENCGFESVGLSHYAISQAKILLWNYSySSLYSLVESQPAFLsLAWKDVPLLTVS 552
*******************8764.....669999********************************9999********9999************ PP
GRAS 372 aWr 374
+Wr
Medtr4g077760.1 553 SWR 555
**8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 556 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIN QKQQQEQHEQ QQHQHHHHHQ NILGITNPLS VSLHPWHNNN 60
IPVSSSTSLP PLSFPPTDFT DPFQVGSGPE NTDPAFNFPS PLDPHSTTFR FSDFDSDDWM 120
DTLMSAADSH SDFHLNPFSS CPTRLSPQPD LLLPATAPLQ IPTQPPTPQR KNDNTTTETT 180
SSFSSSTNPL LKTLTEIASL IETQKPNQAI ETLTHLNKSI SQNGNPNQRV SFYFSQALTN 240
KITAQSSIAS SNSSSTTWEE LTLSYKALND ACPYSKFAHL TANQAILEAT EGSNNIHIVD 300
FGIVQGIQWA ALLQAFATRS SGKPNSVRIS GIPAMALGTS PVSSISATGN RLSEFAKLLG 360
LNFEFTPILT PIELLDESSF CIQPDEALAV NFMLQLYNLL DENTNSVEKA LRLAKSLNPK 420
IVTLGEYEAS LTTRVGFVER FETAFNYFAA FFESLEPNMA LDSPERFQVE SLLLGRRIDG 480
VIGVRERMED KEQWKVLMEN CGFESVGLSH YAISQAKILL WNYSYSSLYS LVESQPAFLS 540
LAWKDVPLLT VSSWR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC142222 | 0.0 | AC142222.22 Medicago truncatula clone mth2-27d20, complete sequence. |
