PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g075480.1

Common Name

MTR_4g075480

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 283aa MW: 31419.9 Da PI: 7.0608

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g075480.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.6e-10	7	56	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+iL +v+ +k+L Medtr4g075480.1 7 RKTQKADREKLRRDRLNEQFLELGNILDPD----RPKNDKATILGDTVQLLKDL 56 6788999******************997....79************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.7E-13	5	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-13	5	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.033	6	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-7	7	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.56E-7	7	61	No hit	No description
SMART	SM00353	2.8E-7	12	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEITPARKTQ KADREKLRRD RLNEQFLELG NILDPDRPKN DKATILGDTV QLLKDLSSQV 60 SKLKDEYTML NEESRELSQE KNDLREEKAS LKSDIENLNN QYQLQLRTMY PWPAMDHSVM 120 MAPPSYPYPV PMPVPAGSIP MQPYPYYANQ HPAVIPNPCS TYVPFLAPNT IVEQQSTQYV 180 SPPLHPGSRS HVSGKQDSKN KSSRESKAQR NEDSNDVATD LELKTPGSSA DQDLTSAQKK 240 SSKSSRKETS FTEGSSLGKC SSSHSVQDSS SSSVVGSRKA SE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.7796	0.0	leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g075480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094437	1e-143	BT094437.1 Soybean clone JCVI-FLGm-24H6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456557.1	0.0	transcription factor bHLH121 isoform X2
Refseq	XP_024637427.1	0.0	transcription factor bHLH121 isoform X2
Refseq	XP_024637428.1	0.0	transcription factor bHLH121 isoform X2
Swissprot	Q9LT23	1e-93	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A072UNE9	0.0	A0A072UNE9_MEDTR; Putative transcription factor bHLH family
STRING	XP_004505689.1	1e-157	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr4g075480.1
Entrez Gene	25492845

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]