PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g067010.1
Common NameMTR_4g067010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 330aa    MW: 37074.1 Da    PI: 5.1395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g067010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11147192454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ + f  L  l+P++     kK++K +iL  +++Y+k+L
  Medtr4g067010.1 147 DHIMAERNRREKLTQTFIALAALVPNL-----KKMDKLSILFDTIKYMKEL 192
                      599************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-15147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-11148197No hitNo description
SuperFamilySSF474595.89E-15148208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9148192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEINNSAMK VSSSISSWLS DLEMDEYNIF AEECNLNFLD ADVGGFLSQD ISNVFQEQNK  60
QQCLSLGSTS TNDLSKSFIH ETIDDSDKIS ESLSPNISPS FQFQIPNSPP SNSKENETIS  120
VSPTELENMN HSTETSKGKR PRAHGRDHIM AERNRREKLT QTFIALAALV PNLKKMDKLS  180
ILFDTIKYMK ELKNRLEVVE EQNKKTKESS STKPCLCSNE DSSSCDDSVE CVIGSTFQVE  240
ARVLGKQMLI RIQCQEHRGL LVKIMVEIQK YQLFVVNSSV IPFGDSILDI TIIAQLGEGY  300
NLSIKELVKN VRMALLKFIH HNMNMSTCN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g067010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR3494660.0KR349466.1 Medicago truncatula triterpene saponin activating regulator 2 (TSAR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456276.10.0transcription factor bHLH19
TrEMBLA0A072UKT50.0A0A072UKT5_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGXP_004509037.11e-105(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-37bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]