PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g065870.3

Common Name

MTR_4g065870

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 417aa MW: 45533.4 Da PI: 6.0096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g065870.3	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	367	412	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +AveYIk+Lq Medtr4g065870.3 367 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVEYIKDLQ 412 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.837	361	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-14	364	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.78E-13	365	416	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-14	366	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-9	367	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-9	367	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MESDLQQHPT MFLDHQNHHH QQQMNSGLTR FKSAPSSYFS NIIDKEFYEH LFNRPSSPET 60 ERVFARFMNS LSGSGGSGGG GGGDAESVSV TASIAPITDS VVDSLTQQLP IVKEEIDQQS 120 QTMQTMNNNN NNNNNEAVDL PQLQRQQSNN MSNYGSSAAP QSFYHNSGRP PLPNQMKTGR 180 SNLIRHGSSP AGLFSNINID TGFAAMRGIG TMGAANSTSK EANFSSSVVR LKNAPNYASA 240 LGAEIGSNSI PQNNLEPEGF AETRGNDFIP GFPLGTTWED TAMISDNITG LKRYRDDDDV 300 KPFPPGLNPA ETKNETGGQT TSAPLAHQMS MPNTTAELAA IEKFLQFSDS VPCKIRAKRG 360 CATHPRSIAE RVRRTKISER MRKLQDLVPN MDKQTNTSDM LDLAVEYIKD LQNQVE*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MESDLQQHPT MFLDHQNHHH QQQMNSGLTR FKSAPSSYFS NIIDKEFYEH LFNRPSSPET  60
ERVFARFMNS LSGSGGSGGG GGGDAESVSV TASIAPITDS VVDSLTQQLP IVKEEIDQQS  120
QTMQTMNNNN NNNNNEAVDL PQLQRQQSNN MSNYGSSAAP QSFYHNSGRP PLPNQMKTGR  180
SNLIRHGSSP AGLFSNINID TGFAAMRGIG TMGAANSTSK EANFSSSVVR LKNAPNYASA  240
LGAEIGSNSI PQNNLEPEGF AETRGNDFIP GFPLGTTWED TAMISDNITG LKRYRDDDDV  300
KPFPPGLNPA ETKNETGGQT TSAPLAHQMS MPNTTAELAA IEKFLQFSDS VPCKIRAKRG  360
CATHPRSIAE RVRRTKISER MRKLQDLVPN MDKQTNTSDM LDLAVEYIKD LQNQVE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.11102	0.0	pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g065870.3

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031118	1e-103	KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456221.1	0.0	transcription factor bHLH122
Swissprot	Q9C690	4e-54	BH122_ARATH; Transcription factor bHLH122
TrEMBL	A0A072UKL1	0.0	A0A072UKL1_MEDTR; Putative transcription factor bHLH family
TrEMBL	A0A072ULI3	0.0	A0A072ULI3_MEDTR; Transcription factor bHLH122-like protein
STRING	AES62716	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	2e-56	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr4g065870.3
Entrez Gene	25492600

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]