PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g065870.2 | ||||||||
Common Name | MTR_4g065870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 415aa MW: 45327.3 Da PI: 6.589 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.5 | 1.6e-05 | 367 | 392 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR +i +++ +L++l+P+ + Medtr4g065870.2 367 SIAERVRRTKISERMRKLQDLVPNmD 392 689********************944 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.55 | 361 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-6 | 364 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.03E-5 | 365 | 399 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-6 | 366 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MESDLQQHPT MFLDHQNHHH QQQMNSGLTR FKSAPSSYFS NIIDKEFYEH LFNRPSSPET 60 ERVFARFMNS LSGSGGSGGG GGGDAESVSV TASIAPITDS VVDSLTQQLP IVKEEIDQQS 120 QTMQTMNNNN NNNNNEAVDL PQLQRQQSNN MSNYGSSAAP QSFYHNSGRP PLPNQMKTGR 180 SNLIRHGSSP AGLFSNINID TGFAAMRGIG TMGAANSTSK EANFSSSVVR LKNAPNYASA 240 LGAEIGSNSI PQNNLEPEGF AETRGNDFIP GFPLGTTWED TAMISDNITG LKRYRDDDDV 300 KPFPPGLNPA ETKNETGGQT TSAPLAHQMS MPNTTAELAA IEKFLQFSDS VPCKIRAKRG 360 CATHPRSIAE RVRRTKISER MRKLQDLVPN MDKVNILTCG TLTNLHNYFE LWLP* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.11102 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g065870.2 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456221.1 | 0.0 | transcription factor bHLH122 | ||||
TrEMBL | A0A072UWL1 | 0.0 | A0A072UWL1_MEDTR; Transcription factor bHLH122-like protein | ||||
STRING | AES62716 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51140.1 | 2e-41 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g065870.2 |
Entrez Gene | 25492600 |
Publications ? help Back to Top | |||
---|---|---|---|
|