PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g063790.1

Common Name

MTR_4g063790

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

M-type_MADS

Protein Properties

Length: 172aa MW: 19689.6 Da PI: 9.8115

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g063790.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50	3.7e-16	11	48	3	40
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i +s+r++tf kR+ngi+KK +E+S+LC++e++ ii Medtr4g063790.1 11 ITGDSKRSITFRKRKNGIMKKINEISTLCGVEACAIIS 48 66789*****************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.638	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-18	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.08E-25	2	85	No hit	No description
SuperFamily	SSF55455	7.06E-24	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-15	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MTRNKVKLAY ITGDSKRSIT FRKRKNGIMK KINEISTLCG VEACAIISEQ NSPQVEVWPS 60 DSGVRSVISR FRSLPGVEQS KKMVDQEVFL RQTIGKVYGQ LKKQRLETRK KEMTNIIDHY 120 IQTVEFNGNS MSKYDLNDFS SFIDENLKEV DRKMKEMTIK DQDEVGNEVG L*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g063790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456110.1	1e-123	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	7e-38	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A072UL53	1e-122	A0A072UL53_MEDTR; MADS-box transcription factor family protein
STRING	XP_004499447.1	3e-74	(Cicer arietinum)
STRING	XP_004499496.1	3e-74	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-40	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Medtr4g063790.1
Entrez Gene	25492504

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]