PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g063735.1 | ||||||||
Common Name | MTR_4g063735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WOX | ||||||||
Protein Properties | Length: 258aa MW: 29192.2 Da PI: 6.8569 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.6e-21 | 24 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+l+++ ++psaee++e++++l +++ ++V++WFqN++a++++ Medtr4g063735.1 24 SRWNPTKEQISMLENLYKQgIKTPSAEEIQEITARLrvygHIEGKNVFYWFQNHKARQRQ 83 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.6 | 5e-37 | 22 | 85 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi +Le+lyk+G++tP++eeiq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqkq Medtr4g063735.1 22 SSSRWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQNHKARQRQKQ 85 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.434 | 19 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-8 | 21 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.29E-13 | 23 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.8E-19 | 24 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-9 | 24 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.41E-8 | 25 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEGENNNEMN EEGSNGNNSI SSSSRWNPTK EQISMLENLY KQGIKTPSAE EIQEITARLR 60 VYGHIEGKNV FYWFQNHKAR QRQKQKQESI AYFNRLLHRP QPIYPSPICP NAMRAPYCVP 120 QPQSHEISYY PQNPKVLLPA VGYRRNHAEK VMSNSNGMSN ICNSPMVYNE NMQQRILNPN 180 YDFGYSNQET LDLFPLHPTG ILEGKSTDQV SSIVSVSADS STDTHSGSSH HEINQDHGYN 240 GNKPFFDFFN NSAGQGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g063735.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348274.1 | 1e-119 | WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A072UK53 | 0.0 | A0A072UK53_MEDTR; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004505911.1 | 1e-107 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-47 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g063735.1 |
Entrez Gene | 25492497 |
Publications ? help Back to Top | |||
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