PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g063100.2 | ||||||||
Common Name | MTR_4g063100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 21945.9 Da PI: 4.4931 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.3e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l +++ ++G++ W++Iar+++ gRt++++k++w++++ Medtr4g063100.2 2 TPQEERLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.97E-11 | 1 | 43 | No hit | No description |
SMART | SM00717 | 9.7E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.799 | 1 | 47 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.34E-12 | 2 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MTPQEERLVM ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKRAQE KKHATPSISS 60 SPDQSSSCQS SHFSNSNHGV DSHASNKESE EENYQVQEIE QGYSMDDIWK DIAMSEDDIN 120 VLQPDFDGTS EENSNNLSCP IMPSTSSWDY SYLDPLWVMD EEESKMLFPP IGDQYFSFYD 180 QQGNTFLTG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11183 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g063100.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139288 | 0.0 | BT139288.1 Medicago truncatula clone JCVI-FLMt-11A19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606617.1 | 1e-141 | transcription factor MYB59 isoform X2 | ||||
Swissprot | Q4JL84 | 9e-38 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | G7JTP5 | 1e-139 | G7JTP5_MEDTR; Myb transcription factor | ||||
STRING | AES88812 | 1e-139 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-39 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g063100.2 |
Entrez Gene | 11414413 |
Publications ? help Back to Top | |||
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