PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g061200.1 | ||||||||
Common Name | MTR_4g061200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | AP2 | ||||||||
Protein Properties | Length: 455aa MW: 50140.6 Da PI: 9.5462 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.6e-17 | 130 | 179 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Medtr4g061200.1 130 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 179 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-15 | 130 | 188 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-9 | 130 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-16 | 131 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.411 | 131 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.22E-10 | 131 | 186 | No hit | No description |
SMART | SM00380 | 8.6E-31 | 131 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-6 | 222 | 266 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.29E-11 | 222 | 267 | No hit | No description |
SMART | SM00380 | 6.4E-9 | 223 | 271 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MLDLNLNDSN STDSTQNQNH NSPMISKNFP QTVDESGTSN SSIVNADGDE DSCSTRDFTL 60 SFDILKTEGS NSNNVVTKEF FPVKLQATSS SFSMKNGSVD FSINQNEEMK IVQAPQQVKK 120 SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV 180 GADINFNLND YDDDLKQTKN LSKEEFVQIL RRQSNGFSRG SSKYRGVTLH KCGRWEARMG 240 QFLGKKAYDK AAIQNNGREA MTNFEASTYE GEMKSAAINE GGSQNLDLNL GIATPGPSPR 300 ENWGQLHFPS SVPYTMQAGR SSKMETNVSG IGDPSLKRLL ATEERHSLWN GMYPAFFSNE 360 ERADSINKAP PKGLPNWAWQ PHGLVTASPV PPVSAAAAAS SGFSINSAPI PSTRMFPPRS 420 MNSIPQSLYF TSPNAPNGNR SPYYYQVKPP QAPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g061200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145164 | 0.0 | AC145164.11 Medicago truncatula clone mth2-27j21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606515.2 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X4 | ||||
Swissprot | Q9SK03 | 1e-119 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | G7JRJ0 | 0.0 | G7JRJ0_MEDTR; AP2-like ethylene-responsive transcription factor | ||||
STRING | AES88712 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-118 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g061200.1 |
Entrez Gene | 11406478 |
Publications ? help Back to Top | |||
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