PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g051538.1
Common NameMTR_4g051538
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 235aa    MW: 25755.2 Da    PI: 5.4397
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g051538.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.28.9e-131660145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k+ie k    v f+ R+ gi+ KA+EL +L++a v ++++s+tgk
  Medtr4g051538.1 16 KKIEKKDDLFVAFTTRKSGIFNKASELTTLTGASVDILMLSPTGK 60
                     5788888889**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.292868IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-15867IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-17978IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-81030IPR002100Transcription factor, MADS-box
PfamPF003192.4E-131764IPR002100Transcription factor, MADS-box
CDDcd001202.62E-102662No hitNo description
PRINTSPR004042.4E-83045IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-84566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MPPKRSSKGK QKIELKKIEK KDDLFVAFTT RKSGIFNKAS ELTTLTGASV DILMLSPTGK  60
PFCYGDPSSE SITKTILNEN PSMEEEMMKP EIIEQNEKND DLLDKKHVAE AQRKNLKMME  120
TSGYWSTTKD QYDQVKEIDK SLVAVTNKLI TNVLKTGGEI HPDAISTIEE LNGVKTNLPY  180
VFEDNTKDHE VGASKDMVAN ASQDIATKKS QGVNLIGVSG IGYGSGVDHT SPDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g051538.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455733.11e-172agamous-like MADS-box protein AGL62
TrEMBLA0A072UJ331e-170A0A072UJ33_MEDTR; MADS-box transcription factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-13AGAMOUS-like 61
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]