PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g051532.1
Common NameMTR_4g051532
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 712aa    MW: 79014.1 Da    PI: 6.6958
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g051532.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94.1e-094224591954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Medtr4g051532.1 422 FEHflHPYPKDSDKVMLARQTGLTRSQVSNWFINARVR 459
                      554459******************************88 PP
2BELL113.71e-36286357172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +rqelq+kk+kL+s+l+eV+ rY+qy++q+q vissFe+++g+g++k+YtslAlk+iS++Fr+Lkd i++qi
  Medtr4g051532.1 286 QRQELQMKKSKLVSMLDEVELRYRQYHHQMQSVISSFEQATGYGASKSYTSLALKTISKQFRSLKDSISSQI 357
                      69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-57215355IPR006563POX domain
PfamPF075262.4E-46217354IPR006563POX domain
PROSITE profilePS5007112.228400463IPR001356Homeobox domain
CDDcd000865.12E-12403464No hitNo description
SMARTSM003891.0E-9403467IPR001356Homeobox domain
SuperFamilySSF466897.27E-17404469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28406469IPR009057Homeodomain-like
PfamPF059208.4E-18420459IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MATYFHGNSN SNSSEIQPSV EGLQTLYLMN PNYVPYSEEE PQNPTQNMLF ANPNATTNNN  60
TSPHALHGFK FPHAPSSLNQ HHLLGVTIPP SNFHGSNTTD TPTQPYEVST FHPFASSATV  120
TPRPHYNMWG SGSFIPDHTV TATTTDRSEC SDVVAVTSST EFRSQQIGFH RPIYQRGLSL  180
SLSSQQTPYR SASGEIEVSP GSRGGEEGGG VSTMNGVVFG SKYLKVAQEL LDEVVNVDKG  240
IIKGESVEGG NSNNNKEKRK VNIESSSSGG RENDGGKQVA ELSTAQRQEL QMKKSKLVSM  300
LDEVELRYRQ YHHQMQSVIS SFEQATGYGA SKSYTSLALK TISKQFRSLK DSISSQIKTA  360
SKTLGEDDCL GVKLEGSRLR YVDHQLRQQR ALQQLGMIHS NAWRPQRGLP ERAVSVLRAW  420
LFEHFLHPYP KDSDKVMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYL EETKEQEENN  480
DSKDNTNKSK ELGVTKLDQI NNLHSKAENF NNQNPSPTVI SSSNNSMSTS TMGGEGGSFQ  540
SNSGFHLAGS SDVQRSPKNS HQGSFLSMDM EMKSNRESNI EVEVERHNQD KNGYPLMSGN  600
ENHHDGGYGS FSMEDIRRFN VSEQLAPRFH GNGVSLTLGL PHNENIPLSS TQHGFLSQNL  660
HLGGTIDEMG SNENEFCTIN TTPSHSETNY ESIDIENRKR FAAQLLRNFV T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16409467563Homeobox protein Meis2
3k2a_B4e-16409467563Homeobox protein Meis2
4xrs_A3e-16409466158Homeobox protein Meis1
4xrs_B3e-16409466158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g051532.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454581e-103AC145458.3 Cicer arietinum strain FLIP84-92C clone gl1-4n10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455732.10.0BEL1-like homeodomain protein 1 isoform X2
TrEMBLA0A072UKZ20.0A0A072UKZ2_MEDTR; BEL1-related homeotic protein
STRINGXP_004506223.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-119BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]