PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g032620.1
Common NameMTR_4g032620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26688 Da    PI: 9.4945
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g032620.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.3e-151050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +i n+  r+ t+ +R  g+lKK +ELS+LC++e++ i++++
  Medtr4g032620.1 10 FIVNDASRKATYNNRWRGLLKKVYELSTLCGVEACAIVYGP 50
                     789************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.231149IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-18160IPR002100Transcription factor, MADS-box
CDDcd002667.05E-26285No hitNo description
SuperFamilySSF554555.49E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRKKMKLAF IVNDASRKAT YNNRWRGLLK KVYELSTLCG VEACAIVYGP YEPQPKIWPS  60
SQGVQTVLSK FRTMTERDKS KKMVNQETYM KERVLKAKEK LKMQRHDNKE KEMAMLMFQY  120
LYEGNFMQSN MSLVDSKHLC WLIDQKLKEV GRRLGEEDNN GQHEIQFQMA PPLTSRNEEM  180
ARMGHGHAGM TVNNGEIIES QLLMGLMMNG NGDETVPFGE VDPRFLPNIM P*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g032620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1353160.0AC135316.15 Medicago truncatula clone mth2-20l8, complete sequence.
GenBankAC1611070.0AC161107.24 Medicago truncatula clone mth2-192o12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605525.11e-174agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-49AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLG7JN851e-173G7JN85_MEDTR; MADS-box transcription factor family protein
STRINGAES877221e-174(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-51AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]