PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g029540.1
Common NameMTR_4g029540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 297aa    MW: 34320.7 Da    PI: 7.7567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g029540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-141257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W+ eEde l++ v+++G+++W++I ++  + Rt+k+c++rw +
  Medtr4g029540.1 12 KGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGLLPRTGKSCRLRWVN 57
                     79*************************8876677**********87 PP
2Myb_DNA-binding38.42.9e-1268108345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++ eE+   +++  q+G++ W++Ia ++  gRt++++k++w 
  Medtr4g029540.1  68 KFSSEEERVVIELQGQFGNK-WAKIATYLE-GRTDNDVKNFWS 108
                      79******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.039163IPR017930Myb domain
SuperFamilySSF466892.8E-2810107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-201060IPR009057Homeodomain-like
SMARTSM007177.0E-131161IPR001005SANT/Myb domain
CDDcd001677.94E-121459No hitNo description
PfamPF139214.8E-121565No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1661113IPR009057Homeodomain-like
PROSITE profilePS5129416.21464115IPR017930Myb domain
SMARTSM007171.2E-965113IPR001005SANT/Myb domain
PfamPF002492.9E-1068108IPR001005SANT/Myb domain
CDDcd001676.02E-868107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEREYERGYI KKGPWSSEED EVLLKHVNKY GPRDWSSIRS KGLLPRTGKS CRLRWVNKLR  60
PNLKTGCKFS SEEERVVIEL QGQFGNKWAK IATYLEGRTD NDVKNFWSSR RKRMERNYPR  120
TPSPPSKQQK NKGKAVSNQV KVEKVPECGS NQLEENLTYP TSYMANKEEF KMINLPDLTK  180
PNYQNLESEL NGIIEFEATP LHTVPSFESS SAYNFPLLPE SQMDFPLFPE CQDLVQDPFD  240
PNFMDMFEQK KCSESVWSKK IGTKLPSLGL EGNSQSTSSN CFFQDIPTEI FEYFSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g029540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455199.10.0transcription factor DUO1
TrEMBLA0A072UTL80.0A0A072UTL8_MEDTR; Myb transcription factor
STRINGXP_004506466.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-63MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]