PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g028720.1 | ||||||||
Common Name | MTR_4g028720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 18640.7 Da PI: 10.234 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.4 | 9.1e-14 | 10 | 47 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +i+n+s r+ t+ +R++gi+KK EL +LC++ ++ ii Medtr4g028720.1 10 FISNDSTRKATYKRRKKGIIKKVRELTILCGIPACAII 47 8**********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.035 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-20 | 1 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-13 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MARKKVKLAF ISNDSTRKAT YKRRKKGIIK KVRELTILCG IPACAIISDP FDSKTEVWPN 60 LKEAKQMIER YQSSYMKDGR KNVNQESFLL QKITKAREQL RMQRHDNHEN ELNILMIWYL 120 QNNKLPDDVT VSDLKDLDKL IEKNLKEIDD KMASLSLSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFISNDSTRKATYKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g028720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209530 | 0.0 | AC209530.2 Medicago truncatula chromosome 7 BAC clone mte1-84j4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003605334.1 | 1e-114 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | G7JJI5 | 1e-112 | G7JJI5_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES87531 | 1e-113 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-35 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g028720.1 |
Entrez Gene | 11432755 |
Publications ? help Back to Top | |||
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