PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g027440.1
Common NameMTR_4g027440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 379aa    MW: 42593.4 Da    PI: 4.7416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g027440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034220242123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC  C+k+F++   L  H  +H
  Medtr4g027440.1 220 YKCDTCNKVFRSYQALGGHRASH 242
                      9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.600.001427IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.88E-5432No hitNo description
SMARTSM003550.04527IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-5528IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-8219242No hitNo description
PfamPF139126.1E-13219244IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.177220247IPR007087Zinc finger, C2H2
SMARTSM003550.014220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-8273300No hitNo description
SMARTSM003550.36278300IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9278300IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307278300IPR007087Zinc finger, C2H2
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMEKHKCKFC MRSFSNGRAL GGHMRSHMMN LPKQTESPTP PPPRAPTVQL SFEAESASSL  60
SSYGLRENPK RSFRFTDPNQ FIDAGSIILQ EDRGSETESS KNPTGPRSKR VKKDNDPVKN  120
SVQNESFSVL SSSSDITTEE EVAFFLISLS REDNNIWKTH TQRHDQQHQD DQYEQQQVEE  180
DEDQEEDEDV EEEEEEEESE AESEEEEEEL KPLKKVRGRY KCDTCNKVFR SYQALGGHRA  240
SHKKNKQVAE SGGDYSISQH HEKINIEKNI NVSEKKIHEC PICFREFASG QALGGHRRTH  300
NIGFGSASAS TSAAAITTMV RRNVKVARVS ANVGDSLLDL NFPAPMDEDE DEHEDNGDDD  360
VSQVEGSAVS DAEFVKPH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g027440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455142.10.0zinc finger protein ZAT9
TrEMBLA0A072UTH20.0A0A072UTH2_MEDTR; Cys2/His2 zinc-finger transcription factor
STRINGXP_004506485.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.19e-33C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]