PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g021855.1
Common NameMTR_4g021855
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 302aa    MW: 34614.4 Da    PI: 6.3477
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g021855.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.92.6e-24169222256
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      + l W+peLH++F+ av+qL G +kA Pk il++m+v+gL + hv+SHLQkYR++
  Medtr4g021855.1 169 TSLSWSPELHQQFLCAVNQL-GLDKARPKMILKIMDVPGLRVGHVASHLQKYRIH 222
                      5689****************.********************************86 PP
2Response_reg52.23.5e-18171212107
                      EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
     Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                      + +d + +v++ ++ ++++ +y +v+ + ++++al ll++kd +D++l+D  mp+md ++++++ +  + ++p+i++   ++++ + + +++Ga
  Medtr4g021855.1  17 IAIDHDIIVLNTIEDMCNRYHY-QVTKCNSASDALYLLERKDcYDVMLIDAHMPNMDVYDFVQNATL-QLNIPVIMMAVDSTKSSIMKSIEYGA 108
                      5678888999************.****************************************9755.559*********************** PP

                      SEEEESS--HHHH CS
     Response_reg  95 kdflsKpfdpeel 107
                        + +Kp ++ee+
  Medtr4g021855.1 109 CTYWTKPLAEEEV 121
                      *******999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.05E-2213148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.8E-2613151No hitNo description
SMARTSM004489.4E-1314125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.83815129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1316122IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.33E-1519128No hitNo description
SuperFamilySSF466894.66E-16166225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-25167225IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-19168222IPR006447Myb domain, plants
PfamPF002491.4E-6172220IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MARFVDNPSF PAGLRVIAID HDIIVLNTIE DMCNRYHYQV TKCNSASDAL YLLERKDCYD  60
VMLIDAHMPN MDVYDFVQNA TLQLNIPVIM MAVDSTKSSI MKSIEYGACT YWTKPLAEEE  120
VKIMWQHVVR NGSTENKEYE IVGSLVVQEC RKRGREDANA SKETLAKKTS LSWSPELHQQ  180
FLCAVNQLGL DKARPKMILK IMDVPGLRVG HVASHLQKYR IHLKRSADET KRGRTKSKWS  240
DSFQAEWIDK VHSYDFQTKS IDQDRNDNLI QTELADQDRN DDFLAEWIDC GTGSYLHNLM  300
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g021855.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455011.11e-168two-component response regulator ARR14
TrEMBLA0A072UHY90.0A0A072UHY9_MEDTR; Response regulator receiver domain protein
STRINGAES975015e-96(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.15e-58response regulator 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]