PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g013260.1
Common NameMTR_4g013260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 494aa    MW: 55888.1 Da    PI: 6.5103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g013260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.62e-31184242260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYG K+vkgse+prsYY+Ct + C++kkkvers +d+++++i+Y+g+Hnh+k
  Medtr4g013260.1 184 EDGYKWRKYGEKQVKGSENPRSYYKCTNPICSMKKKVERSLDDGQITQIVYKGSHNHPK 242
                      7********************************************************85 PP
2WRKY101.16.4e-32335393159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+C  +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Medtr4g013260.1 335 LDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERAAHDIKAVITTYEGKHNHD 393
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-28173243IPR003657WRKY domain
SuperFamilySSF1182908.37E-25180243IPR003657WRKY domain
SMARTSM007742.6E-33183242IPR003657WRKY domain
PROSITE profilePS5081125.499184243IPR003657WRKY domain
PfamPF031063.3E-24184241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-36320395IPR003657WRKY domain
SuperFamilySSF1182902.35E-28327395IPR003657WRKY domain
PROSITE profilePS5081137.551330395IPR003657WRKY domain
SMARTSM007741.0E-35335394IPR003657WRKY domain
PfamPF031063.3E-24336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSFSFNNHFS NTNNNITTLD ITKFVETSSL KTHDDDHFAL DDVIYPSYSD FPPGFSPSEL  60
LNSPSFLSSS NIPSSYTNEP STVQSMNQQH SKELEERNFS EPSFQTQKQT MHDLFQSSTS  120
MFQVEEPLKT HDTLIFNEST KQTNFSFEGT TKHEAQTNSS VPNSSYFNNT SASMSIREQR  180
KSEEDGYKWR KYGEKQVKGS ENPRSYYKCT NPICSMKKKV ERSLDDGQIT QIVYKGSHNH  240
PKPQCTKRRA NSQYIHQPSS SCNNSMVSDL SLGEDDFDQT SQTSFSGGDY DDLGIEAKRW  300
KGENENDSYS YSTEGCRTVK EPRVVVQTTS EIDILDDGYR WRKYGQKVVK GNPNPRSYYK  360
CVIQGCTVRK HVERAAHDIK AVITTYEGKH NHDVPLGRGI SSSSINSTSL NNNTCNVTPI  420
RPSAVTNYSS LANFTNSLHD SKLPTSENQE HFQLDMLMNS RSFLDRSIGS NTNSEQYATK  480
DDSFLQSFVL KNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34184395877Probable WRKY transcription factor 4
2lex_A2e-34184395877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g013260.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454784.10.0probable WRKY transcription factor 33
SwissprotQ6B6R45e-95WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A072USH60.0A0A072USH6_MEDTR; Putative transcription factor WRKY family
STRINGXP_004506827.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-95WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]