PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g007060.3 | ||||||||
Common Name | MTR_4g007060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 284aa MW: 31591.4 Da PI: 9.1326 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.1 | 9.8e-30 | 127 | 186 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d+++++ tYegeHnh+ Medtr4g007060.3 127 VKDGYHWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVDDQSMLVATYEGEHNHP 186 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-29 | 118 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-26 | 125 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.498 | 126 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-34 | 127 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 128 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 284 aa Download sequence Send to blast |
MNLMYTIDSK FQSIDELEEE LKRVTLENKK LVEMLSVVCE NYNTLRSHLM EYMKRNPEKE 60 VSTSSKKRKS ESSNNNNSNL IGINNGNSES SSTDEESCKK PREEENIKAK ISRAYVRTEV 120 SDTGLIVKDG YHWRKYGQKV TRDNPCPRAY FKCSFAPSCP VKKKVQRSVD DQSMLVATYE 180 GEHNHPQPPQ IESTSGSGRS VNHSSVPCSA SLTSPAAPKV VTLDSTTSKN SKDSKSIEPR 240 KDSPKEAKVP KNLVEQMATS LTTDPNFRAA LVAAISGRLV HNN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 126 | 189 | 13 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.4764 | 0.0 | leaf| root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g007060.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT051549 | 0.0 | BT051549.1 Medicago truncatula clone MTYF5_F6_F7_F81G-K-14 unknown mRNA. | |||
GenBank | BT136812 | 0.0 | BT136812.1 Medicago truncatula clone JCVI-FLMt-15N14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003604245.1 | 1e-172 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-91 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A072UHF0 | 0.0 | A0A072UHF0_MEDTR; WRKY transcription factor | ||||
STRING | AES86442 | 1e-172 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 7e-83 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g007060.3 |
Entrez Gene | 11420490 |