PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g466980.1
Common NameMTR_3g466980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25484 Da    PI: 8.4879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g466980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.4e-151150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i ++ +r+ tf kR+ng++KK  E+S+LC++e++ iif +
  Medtr3g466980.1 11 ITSDAKRKGTFKKRKNGLIKKIDEISTLCGIEACAIIFDQ 50
                     88999********************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.329151IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-23295IPR002100Transcription factor, MADS-box
CDDcd002663.76E-29283No hitNo description
PRINTSPR004049.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTRKKVNLAY ITSDAKRKGT FKKRKNGLIK KIDEISTLCG IEACAIIFDQ NDPQPEVWPS  60
PWGVQTVLSK FKRLPELEQS KKMFNQESFL KQRIQKAQEQ LKKQRNDNKR KEMTHLMFQC  120
LNAGQIFDHV GMDDLNDISW LIDQNLKQID RKLDQSQAEE VVQNQAGNVS GGEQGMENIA  180
DPMQRQHWPM DFTNNNIGDV LPFENGNNVP FGNNVPHGFW P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAYITSDAKRKGTFKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g466980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460436.11e-164agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-53AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A072UXE21e-163A0A072UXE2_MEDTR; MADS-box transcription factor family protein
STRINGXP_004500454.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-55AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]