PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g465110.1
Common NameMTR_3g465110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Nin-like
Protein Properties Length: 551aa    MW: 62292.2 Da    PI: 5.7676
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g465110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK49.48.9e-16440487451
           RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                      + +l d   yF+lp+++AA  +++ +++LK+i R+  ++RWPhRk+k 
  Medtr3g465110.1 440 QFTLADFVDYFHLPMEEAAARMNIAASTLKKISRRTKLRRWPHRKVKC 487
                      67889999**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.72422509IPR003035RWP-RK domain
PfamPF020424.3E-15441486IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MANRKNNPSI EGATFKFDDD DAIDPNFFNM SNPTLNDIYM NNNNNGPTNL SQPNHHSNLS  60
NPNPTNLSIN RNNNGPHQIY HGLGILQRGQ QSSNFNGHFS NPLSQQNCHG LGILLQGYGS  120
NEQFHTTLSQ QNHQNVVEHG HGSNIGNVPF NSNAMPQNDH GIQHGRSGNY DPFNYNLVSQ  180
ENDHGILQHG GGRNYDPFNY NLISPENDYG IQQGQDGNND LFSHAMSQQN HPGIQHGHGT  240
TNETFSLPMV QNQLGQPNNN VSFGMNNFEA GSSSRTNENQ QQTEALALDQ WPPEQQQNSS  300
SGSQVLRRII HSNGFQYENL EIHGSLELIT HAIHHVTPVN GGPTFDRMID FSGQGLGEIK  360
NFLDEYCIAR NSAGYFLIQD SMSTYYETLC TGYDWIDDIN MEGPIDNFSD EIMEQEQEQV  420
GEIETPEKRN LSEQRKRCAQ FTLADFVDYF HLPMEEAAAR MNIAASTLKK ISRRTKLRRW  480
PHRKVKCLLR QIAILQNQLD RQDPATRKRT EEEIKKIEQE MIADCRGHRP TALNYVANFL  540
PPEQLQQQQQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g465110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072V8940.0A0A072V894_MEDTR; Putative transcription factor Nin-like family
STRINGAES837560.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74782846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.16e-07RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]