PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g462790.1
Common NameMTR_3g462790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 323aa    MW: 36557.8 Da    PI: 9.3604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g462790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-084286345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a + + ++   +W+++a++++ g++  ++ + + 
  Medtr3g462790.1 42 KWTPAENKLFENALAVYDKDtpdRWHKVAAMIP-GKSVVDVMNQYK 86
                     8********************************.********9997 PP
2Myb_DNA-binding44.63.4e-14148192347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Medtr3g462790.1 148 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 192
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5333892IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.0E-43887IPR009057Homeodomain-like
SMARTSM007178.2E-103991IPR001005SANT/Myb domain
SuperFamilySSF466896.37E-124196IPR009057Homeodomain-like
CDDcd001674.90E-84288No hitNo description
PfamPF002492.1E-74287IPR001005SANT/Myb domain
PROSITE profilePS5129420.486141197IPR017930Myb domain
SuperFamilySSF466898.61E-17143196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17144196IPR006447Myb domain, plants
SMARTSM007175.3E-13145195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12145192IPR009057Homeodomain-like
CDDcd001673.28E-11148193No hitNo description
PfamPF002491.2E-12148192IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKWEMEILSP NSHPHAPFVQ NSNNTNNWFL EDCSNSINRS TKWTPAENKL FENALAVYDK  60
DTPDRWHKVA AMIPGKSVVD VMNQYKELEA DVCNIEAGLV PIPGYSTTAS PFTLDWVNSS  120
GYDGFRGISG KRGSSGRSPD QERKKGVPWT EEEHKLFLLG LKKYGKGDWR NISRNFVITR  180
TPTQVASHAQ KYFIRQLSGG KDKRRASIHD ITTVNLTEVS RTSPTSEETK RSTSPNMIMN  240
KYSTANTTSE MHFQPATMTA FNPSHEQVFM SPYGVNNNNS YGFKMQGQNM HRNPLHESSY  300
FGPQTQNMVF QMQSSQQHYS HA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-15431151183RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g462790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460157.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-116DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A072UYJ10.0A0A072UYJ1_MEDTR; MYB transcription factor MYB51
STRINGXP_004500230.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.14e-82Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]