PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g452660.1 | ||||||||
Common Name | MTR_3g452660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 292aa MW: 31517.1 Da PI: 5.8323 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.5 | 3.6e-41 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+++C +apyf e+p++fanvh++FGasnv kllk+l+ ++reda++sl+yeAe r++dPvyG+vg+i+ lqq+l+++++el Medtr3g452660.1 7 PCAACKFLRRKCTQECDFAPYFLPENPQRFANVHRVFGASNVAKLLKELDVKDREDAVKSLAYEAESRIKDPVYGCVGLISYLQQKLRETQNEL 100 7********************************************************************************************* PP DUF260 95 allkee 100 ++k+e Medtr3g452660.1 101 TVAKKE 106 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.029 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-41 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECDFAPYFLP ENPQRFANVH RVFGASNVAK LLKELDVKDR 60 EDAVKSLAYE AESRIKDPVY GCVGLISYLQ QKLRETQNEL TVAKKELAGY NLNPQTMQCL 120 LMNSGTVLMP QQQQQQQQQW NSQFAAFANY PNNFPQEMVG GGGLVMQQQQ EHELQMGGGY 180 QVTPQEYLLR SGGGYQMGGG LQMGAGAGGV AVSDHADVAH PLDMGNFDNG ASGGAGGGVY 240 YQIPQQGGEQ QHNYHVGVAH ANPVEAQLLL SPQNQEAGED GKSVGSAHRS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g452660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013459745.1 | 0.0 | protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A072UWH3 | 0.0 | A0A072UWH3_MEDTR; LOB domain protein | ||||
STRING | XP_004500020.1 | 2e-98 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24122 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-53 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g452660.1 |
Entrez Gene | 25490669 |
Publications ? help Back to Top | |||
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