PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g450310.1 | ||||||||
Common Name | MTR_3g450310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 212aa MW: 24262.2 Da PI: 8.6165 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.1 | 2.3e-29 | 19 | 73 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWtpeLH+ Fv+ ve+LGG++kA Pk+il++m+vkgL ++h+kSHLQ+YR Medtr3g450310.1 19 QPRLRWTPELHQYFVQTVESLGGKDKASPKHILNMMQVKGLRISHIKSHLQMYRN 73 59****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.867 | 16 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-27 | 16 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.5E-14 | 18 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-22 | 20 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.1E-8 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKNNNSKRSG VRKYHKSEQP RLRWTPELHQ YFVQTVESLG GKDKASPKHI LNMMQVKGLR 60 ISHIKSHLQM YRNVKGQTIL APTLEENAKF NHLPMCSSCS PQRSRNINQE LQPLHNKRLS 120 QASETDHYYD LNQEPESSAC FLSDISNEEN DCRTTKYLNL PFPFSSLIIP MVHSDQGITH 180 FSSPNETNNH DVDSSSIKSH GRDYINLDLS I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 19 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g450310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT148496 | 0.0 | BT148496.1 Medicago truncatula clone JCVI-FLMt-14F11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553155.2 | 4e-86 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A072UUY9 | 1e-156 | A0A072UUY9_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | GLYMA18G14071.1 | 2e-85 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9186 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 5e-26 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g450310.1 |
Entrez Gene | 25490573 |
Publications ? help Back to Top | |||
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