PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g435680.1

Common Name

MTR_3g435680

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

C3H

Protein Properties

Length: 397aa MW: 43017 Da PI: 6.0822

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g435680.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	196	216	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G Ck+ d+C FaHg Medtr3g435680.1 196 PCPDFKK-GDCKRADTCEFAHG 216 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.4E-5	191	217	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.737	191	218	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	196	216	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.3E-5	196	217	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.7E-4	223	254	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MADSMVDASD GSIDTLKVTP SGPEAGVNAS DADSSGLVNA ADAAGADINR VDANGNHPVD 60 VMVVPHKLEV VKTSLEELLL SPGADISCSV PLSVNSSSPH SAAPLSSAEN ESPSSPVAPK 120 FTDTAVNSAS EKKEYPIALP SVESSMYATD EFRMYSFKVL LCPRAYSHDW TECPFKHPHE 180 NARRRDLRKF TYSCVPCPDF KKGDCKRADT CEFAHGLFET WLHPDRYRTI LCKDGTSCDR 240 KVCFFAHLAE ELRPIYVSTG SAVPLPRSAA SAPNVMDNAA ATSLYRGLLP TPFALPLSPY 300 ANGISPSNNA RPALRLPGRN MFQDIHCQQH MLNDLSCFSQ PRPGAISVSR SVNSWSNWGS 360 RTRKPDWSVN GSDFGRSQHG NNDEDPDLSW VQSLLN*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MADSMVDASD GSIDTLKVTP SGPEAGVNAS DADSSGLVNA ADAAGADINR VDANGNHPVD  60
VMVVPHKLEV VKTSLEELLL SPGADISCSV PLSVNSSSPH SAAPLSSAEN ESPSSPVAPK  120
FTDTAVNSAS EKKEYPIALP SVESSMYATD EFRMYSFKVL LCPRAYSHDW TECPFKHPHE  180
NARRRDLRKF TYSCVPCPDF KKGDCKRADT CEFAHGLFET WLHPDRYRTI LCKDGTSCDR  240
KVCFFAHLAE ELRPIYVSTG SAVPLPRSAA SAPNVMDNAA ATSLYRGLLP TPFALPLSPY  300
ANGISPSNNA RPALRLPGRN MFQDIHCQQH MLNDLSCFSQ PRPGAISVSR SVNSWSNWGS  360
RTRKPDWSVN GSDFGRSQHG NNDEDPDLSW VQSLLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g435680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013459294.1	0.0	zinc finger CCCH domain-containing protein 24
Swissprot	P93755	1e-93	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A396IP67	0.0	A0A396IP67_MEDTR; Putative transcription factor C3H family
STRING	XP_004499884.1	1e-140	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	3e-93	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Medtr3g435680.1
Entrez Gene	25490416

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]