PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g435150.1

Common Name

MTR_3g435150

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NAC

Protein Properties

Length: 304aa MW: 34581.5 Da PI: 9.5256

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g435150.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.8	7.3e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ Medtr3g435150.1 16 LPPGFRFHPTDEELISHYLYKKVIDINFSA-RAIGEVDLNKSEPWDLPCKAKMGEKEWYFFCMRDKKYPTGLRTNRATEAGYWKATGKDKEIYR 108 79************************99.89***********999999************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfykgrapkgek++Wvmheyrle Medtr3g435150.1 109 -GKYLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 142 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.639	16	166	IPR003441	NAC domain
Pfam	PF02365	1.9E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MENVSVLCKE KDQMVLPPGF RFHPTDEELI SHYLYKKVID INFSARAIGE VDLNKSEPWD 60 LPCKAKMGEK EWYFFCMRDK KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK YLVGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKFSVYNL PKTAKNEWVI CRVFKKSLSG KKTCHSGIMR 180 LESLGNEMSS SILPPLTNSS PYSIDKIKSP YVSCFSNPIE RNQVGIFDSF NNTPFEVPSN 240 HSINLPKNTP SIGSFYSTQG IQVHPSPNLP LHGSVYNNGS NFENQHHPPS STAPIDLSTL 300 WNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	6e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	6e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g435150.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013459264.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-126	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A072V531	0.0	A0A072V531_MEDTR; NAC transcription factor-like protein
STRING	GLYMA17G10970.1	1e-152	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-128	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Medtr3g435150.1
Entrez Gene	25490388

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]