PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g114060.1
Common NameMTR_3g114060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 335aa    MW: 36832.2 Da    PI: 9.6996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g114060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09143184240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++WT+eE ell ++++++++g   +W+ +++++g+gR+ +++
  Medtr3g114060.1 143 KPWTKEEIELLRKGIRKFPKGtsrRWEVVSEYIGTGRSVEEI 184
                      69************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.539137192IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-6139185IPR009057Homeodomain-like
SMARTSM007175.6E-8141194IPR001005SANT/Myb domain
PfamPF002494.2E-8143184IPR001005SANT/Myb domain
SuperFamilySSF466894.19E-8143187IPR009057Homeodomain-like
CDDcd001671.36E-6144186No hitNo description
SMARTSM007176.0E-5274326IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-7276330IPR009057Homeodomain-like
PROSITE profilePS500905.901278324IPR017877Myb-like domain
CDDcd001675.25E-4278324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSKIGILNYY DGKIVNLVSI SLSFPSPPLL SKTQLSNKAS QKTEAAKKAK KIEIDVNFKA  60
IQEAYAVLVD PVEELCMSFD IEQLRGLCEK MEGKEVLEQA EALRDALSCK KDAVDEKSNQ  120
QNGSVKVNGS SNSLASYVEK KEKPWTKEEI ELLRKGIRKF PKGTSRRWEV VSEYIGTGRS  180
VEEIMKATKT VLLQKPDTAK AFDTFLEKRK PAAQTIASPL TTREELEGVS VPAATTTTEN  240
GAAKTTTVPT PTTTTLTPIT TNSISSEDSQ GVFEQEVWSA VQERALVQAL KTFPKEASQR  300
WERVAAAVTG KIVGQCKKKF AMMKESFRNK KAAV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98800.0flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g114060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682450.0CU468245.4 M.truncatula DNA sequence from clone MTH2-17F13 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634973.10.0transcription factor MAMYB
TrEMBLG7J5970.0G7J597_MEDTR; Myb-like DNA-binding domain protein, putative
STRINGAES740250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.14e-81DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]