PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g113680.1
Common NameMTR_3g113680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 654aa    MW: 74583.4 Da    PI: 9.13
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g113680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-09458499240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++WT+eE ell ++++++++g   +W+ +++++g+gR+ +++
  Medtr3g113680.1 458 KPWTKEEIELLRKGIQKFPKGtsrRWEVVSEYIGTGRSVEEI 499
                      69************************************9987 PP
2Myb_DNA-binding25.53e-08596640345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W++  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
  Medtr3g113680.1 596 PWSAVQERALVQALKTFPKEanqRWERVAAAVP-GKTVIQCKKKFA 640
                      8********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.4E-1893195IPR001623DnaJ domain
SuperFamilySSF465653.01E-1894202IPR001623DnaJ domain
SMARTSM002712.6E-1495170IPR001623DnaJ domain
PfamPF002269.9E-1696175IPR001623DnaJ domain
CDDcd062572.82E-1096167IPR001623DnaJ domain
PROSITE profilePS5007616.96596178IPR001623DnaJ domain
PRINTSPR006252.2E-6101119IPR001623DnaJ domain
PRINTSPR006252.2E-6119134IPR001623DnaJ domain
PRINTSPR006252.2E-6150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS512937.044455510IPR017884SANT domain
SMARTSM007175.8E-8456509IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5458500IPR009057Homeodomain-like
SuperFamilySSF466896.06E-8458502IPR009057Homeodomain-like
PfamPF002497.5E-8458499IPR001005SANT/Myb domain
CDDcd001679.04E-6459501No hitNo description
PROSITE profilePS512939.839592647IPR017884SANT domain
SMARTSM007178.6E-9593645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5594640IPR009057Homeodomain-like
SuperFamilySSF466898.58E-9595649IPR009057Homeodomain-like
CDDcd001672.96E-6596643No hitNo description
PfamPF002491.6E-6596642IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAVPTKYRLI TYSQELVDGQ PIFVSSNCLP VKALKYDPAG HSFHAAALKL LGVTKEDNKD  60
ADNKKVVEDK EHVYLPSDSY SSKSKKKSGD GDKQQDHYAL LGLSHLRYLA TEDQIRKSYH  120
KTSLRFHPDK QAAAVLSEQT EAAKEAKKIE IDVHFKAIQE AYAVLVDPVK RRIYDSTDEF  180
DDEIPTDCDP QDFYNVFGPA FMRNGRWSVN QPIPSLGDDK SSIKEVDSFY NFWYSFKSWR  240
EFPQADEFDF EQAESRDHKR WMERQNAKLS EKARKEEYAR IRTLVDNAYK RDPRILRRKE  300
EAKAEKKRKK ESKYMAKRLE EEEAARIAEE EKQRKAEEDK KAAEAALQQK KVKEKEKKLL  360
RKERTRLRTL SRPILSQHIL DIAEDDVEEL CMSFDIEQLR GLCEKMEGKE VSEQVEALRD  420
ALSCKKNVVD EKSNQQNGSV KANGSSSSLA GYIEKKEKPW TKEEIELLRK GIQKFPKGTS  480
RRWEVVSEYI GTGRSVEEIM KATKTVLLQK PDTAKAFDTF LEKRKPAAQT IASPLSTREE  540
LEGVSIPATT TENSDAKTTT TIPTPTMTTA TIPTPVPTAT SSINSEDSQG VSEQEPWSAV  600
QERALVQALK TFPKEANQRW ERVAAAVPGK TVIQCKKKFA MMKENFRNKK TAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-2119229520123Zuotin
5dje_B9e-2119229520123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305309KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98800.0flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g113680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453290.0AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
GenBankAC1633830.0AC163383.4 Medicago truncatula strain A17 clone mte1-56p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462221.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A072V3L90.0A0A072V3L9_MEDTR; DnaJ domain-containing protein
STRINGAES821780.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-121DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]