PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g106060.1
Common NameMTR_3g106060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 295aa    MW: 32949.1 Da    PI: 7.9216
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g106060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30137196159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ ++++ pr+Y++C++a gCpvkkkv+rs ed++v+++tYegeHnh 
  Medtr3g106060.1 137 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApGCPVKKKVQRSVEDQNVLVTTYEGEHNHA 196
                      58***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-29132196IPR003657WRKY domain
SuperFamilySSF1182907.06E-25136197IPR003657WRKY domain
SMARTSM007741.6E-34137197IPR003657WRKY domain
PfamPF031068.4E-25138195IPR003657WRKY domain
PROSITE profilePS5081125.935139195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEPTCVDTSL NLNVIPSRDK PVAAVADQVL VEELERLSSE NKRLTEKLNH MCNNYIALQK  60
HLSQFSQTNF ENELVSPISR KRKAESVENC FNRFGYAIAE SSTITTEEET FKHNNIISPK  120
VSKVLVQTDA SNTGLYVKDG YQWRKYGQKV TRDNPSPRAY FKCSFAPGCP VKKKVQRSVE  180
DQNVLVTTYE GEHNHAHHQP EMSLTSSNQS ETTPTYNLVP ASSSSPINWR TAQASKLDLV  240
QPRQLVVDDS HKSSIQQLLV QQMATSLTRD PNFAAALATA ISGRIIILDV ENPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-211371951471WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143030.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g106060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196030.0CU019603.9 M.truncatula DNA sequence from clone MTH2-139F11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603300.10.0probable WRKY transcription factor 40 isoform X1
TrEMBLG7J9V10.0G7J9V1_MEDTR; Putative transcription factor WRKY family
STRINGAES735510.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-65WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]