PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g103960.1
Common NameMTR_3g103960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 279aa    MW: 31838.9 Da    PI: 8.4134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g103960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.45.7e-0997119426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ G C  Gd+C+FaHg
  Medtr3g103960.1  97 NPCPEFRKLGNCTKGDSCHFAHG 119
                      59********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.72E-692123IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-593120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-793121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.40893121IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-697119IPR000571Zinc finger, CCCH-type
SMARTSM0035636129152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MIKIPNLKIP EWNTTQYEEV TFSNHFISND IDIHTSCMTE DFDLPIHVFS TDQFRMFEFK  60
VRKCQRGRSH DWTDCPYSHP GEKARRRDPQ KYNYSGNPCP EFRKLGNCTK GDSCHFAHGV  120
FECWLHPSRY RTQLCNDGTL CRRRVCFFAH TIDQLRVSNN ASPESFVSSP TSVLDSSPRK  180
SRYGVPPVNV RELVGFMRSV RVDEWSPVSK MGSVFGSPRP RGGFLSLPSN YEGVGMERVE  240
SGRDLRAKIY EKFGRLNSND GVVSVPVPDI GWVAELVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A3e-117516832133RING finger protein unkempt homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.140010.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g103960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682750.0CU468275.4 M.truncatula DNA sequence from clone MTH2-119O23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603107.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-69C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLG7J7140.0G7J714_MEDTR; Putative transcription factor C3H family
STRINGAES733580.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.15e-72C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]