PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g102600.2 | ||||||||
Common Name | MTR_3g102600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARR-B | ||||||||
Protein Properties | Length: 190aa MW: 21694.2 Da PI: 4.6089 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 66.1 | 6.1e-21 | 134 | 183 | 3 | 53 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 + +W+ eLH++F+e v+qL G +kA+Pk+i +lm+v+ +t+e+v+ HLQ + Medtr3g102600.2 134 QFVWSVELHRKFLETVNQL-GVDKAVPKKIFDLMNVENITREDVATHLQAF 183 678****************.*****************************87 PP | |||||||
2 | Response_reg | 80.6 | 5.1e-27 | 14 | 122 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ + ll+++l++ +y +v++++++ al++l+e+ +Dl++ + mp+mdGl+ll+ e++lp+i+++ahge e++ +a++ Medtr3g102600.2 14 VLAVDDDPTSLLLLETLLRSCQY-HVTTTSEAITALTMLQENIdmFDLVIAEVHMPDMDGLKLLELVGL-EMDLPVIMLSAHGETELVMKAISH 105 799********************.***************999899*******************87754.558********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga+dfl Kp+ eel++ Medtr3g102600.2 106 GARDFLLKPVRLEELRN 122 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.7E-38 | 11 | 131 | No hit | No description |
SuperFamily | SSF52172 | 7.97E-35 | 11 | 134 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 9.2E-29 | 12 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.486 | 13 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-23 | 14 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.26E-21 | 15 | 128 | No hit | No description |
SuperFamily | SSF46689 | 2.78E-15 | 131 | 186 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 132 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-19 | 134 | 185 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDDFSDRFPI GMRVLAVDDD PTSLLLLETL LRSCQYHVTT TSEAITALTM LQENIDMFDL 60 VIAEVHMPDM DGLKLLELVG LEMDLPVIML SAHGETELVM KAISHGARDF LLKPVRLEEL 120 RNIWQHVIRN KESQFVWSVE LHRKFLETVN QLGVDKAVPK KIFDLMNVEN ITREDVATHL 180 QAFFQSFTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-16 | 131 | 183 | 4 | 56 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11681 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g102600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ647414 | 0.0 | JQ647414.1 Medicago truncatula cultivar Jemalong A17 response regulator 1 (RR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013461736.2 | 1e-121 | uncharacterized protein LOC25489924 | ||||
Swissprot | O49397 | 4e-76 | ARR10_ARATH; Two-component response regulator ARR10 | ||||
TrEMBL | A0A072V176 | 1e-135 | A0A072V176_MEDTR; Putative response regulator and transcription factor RR-A-type family | ||||
STRING | AES83961 | 1e-129 | (Medicago truncatula) | ||||
STRING | AES85610 | 1e-129 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 1e-73 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g102600.2 |
Entrez Gene | 25489925 |