PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g101290.1 | ||||||||
Common Name | MTR_3g101290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 227aa MW: 25223.8 Da PI: 6.8758 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.4e-19 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+q+G ++W++I+r++ gR++k+c++rw + Medtr3g101290.1 37 KGPWSAEEDRILTRLVEQHGARNWSLISRYIK-GRSGKSCRLRWCNQ 82 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.7e-18 | 91 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ +Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ Medtr3g101290.1 91 PFSSQEDETIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 133 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.403 | 32 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-31 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-17 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-18 | 37 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 38 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-15 | 39 | 81 | No hit | No description |
SMART | SM00717 | 1.9E-15 | 88 | 136 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.841 | 89 | 138 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-14 | 91 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.12E-12 | 91 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-23 | 91 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDLNMNFEAI NRSSSTTTSS SDSCSSETNQ NKLDRIKGPW SAEEDRILTR LVEQHGARNW 60 SLISRYIKGR SGKSCRLRWC NQLSPTVEHR PFSSQEDETI IAAHAQYGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRAGC GGSVTVAGGG NEGGQFTFPL EDDPLTALTL APPGNGVEDR 180 EEMVGDHRFP SPENVPTEFW DVMRGVIARE VREYVSSNFS HNSSFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-40 | 34 | 138 | 4 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2832 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:9678577}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g101290.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138158 | 0.0 | BT138158.1 Medicago truncatula clone JCVI-FLMt-6N5 unknown mRNA. | |||
GenBank | CR956399 | 0.0 | CR956399.4 M.truncatula DNA sequence from clone MTH2-7L7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603000.1 | 1e-169 | transcription factor MYB73 | ||||
Swissprot | Q9SN12 | 8e-57 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | G7J5T5 | 1e-168 | G7J5T5_MEDTR; Myb transcription factor | ||||
STRING | AES73251 | 1e-169 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-57 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g101290.1 |
Entrez Gene | 11434242 |
Publications ? help Back to Top | |||
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