PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g100650.1

Common Name

MTR_3g100650

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

ZF-HD

Protein Properties

Length: 275aa MW: 30118.1 Da PI: 5.9922

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g100650.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98	7.2e-31	77	132	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrYkeC+kNhA+s+GghavDGC+Ef+++ geegt +a+ CaACgCHRnFHR+e + Medtr3g100650.1 77 TVRYKECQKNHAVSIGGHAVDGCCEFLAA-GEEGTLEAVICAACGCHRNFHRKEIDG 132 79************************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-20	76	137	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-28	78	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.1E-27	79	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.19	80	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.48E-18	197	272	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-30	200	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.9E-24	211	267	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEFDEHEDLE EEEEEEEEEE EEEEEEEQMG FPVTPVACYD SLGNSGVRSK NGGGIGSADG 60 GAATATGGGV KSGLAGTVRY KECQKNHAVS IGGHAVDGCC EFLAAGEEGT LEAVICAACG 120 CHRNFHRKEI DGEFTTQRSH HPQHHHHQLS PYYHRAALPP PPGFHHHSVT PPISQHRPLA 180 LPPAASSRGY SREEDNVSNP SSSGGGGSGT KKRFRTKFTQ EQKDKMLAFA EKIGWRIQKE 240 DEGAIEQFCA ENFIKRHVLK VWMHNNKHTL GKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-26	210	269	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.16854	0.0	leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g100650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU424435	0.0	CU424435.4 M.truncatula DNA sequence from clone MTH2-64C24 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003602944.1	0.0	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	5e-68	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	G7J570	0.0	G7J570_MEDTR; Homeobox domain, ZF-HD class protein
STRING	AES73195	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-61	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Medtr3g100650.1
Entrez Gene	11435175

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]