PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g093830.1
Common NameMTR_3g093830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 311aa    MW: 35459.5 Da    PI: 5.1451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g093830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.92.4e-24127187259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqKe+ +s+fprsY+rCt +   gC+++k+v+  +e+p++ +itY g H+++
  Medtr3g093830.1 127 GDTHSWRKYGQKEILNSNFPRSYFRCTRKhdqGCKATKQVQLIEENPEMYQITYIGFHTCK 187
                      599************************988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-23119187IPR003657WRKY domain
PROSITE profilePS5081117.339121189IPR003657WRKY domain
SuperFamilySSF1182901.57E-23123187IPR003657WRKY domain
SMARTSM007749.9E-35126188IPR003657WRKY domain
PfamPF031064.9E-24128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNVILPETVS AKKKKLLIKE LLQGKEYATQ LKLLLKNPVC SDGSPSVKEL VTNVLRSFSE  60
TISVMNSTED CSLDVNDSGS LVEADDLKSE DTSESKKRLS PTTKDRRGSY KRRKTDETRT  120
IVSKTIGDTH SWRKYGQKEI LNSNFPRSYF RCTRKHDQGC KATKQVQLIE ENPEMYQITY  180
IGFHTCKSTL HTPQMVSFSE DTNWDSILVN SNPHSKEVLT NYDQQDSHVI SSERSIVKQE  240
YPNNDDSTTP RSDVTDNLLD PNLWSDFKDF ELSKDIVYSC TESQNLEIDF GVFSSDFSND  300
LIYFDESHLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20120187269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195113KKRLSPTTKDRRGSYKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.27130.0leaf| pod| root| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g093830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1414160.0BT141416.1 Medicago truncatula clone JCVI-FLMt-15E9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461494.10.0probable WRKY transcription factor 70
TrEMBLA0A072V0I20.0A0A072V0I2_MEDTR; Putative transcription factor WRKY family
STRINGXP_004502820.11e-146(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-47WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]