PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g090860.1
Common NameMTR_3g090860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 341aa    MW: 38338.7 Da    PI: 6.677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g090860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48e-30132193159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  Medtr3g090860.1 132 LDDGYSWRKYGQKDILGAMHPRGYYRCTHRnvlGCLATKQVQRSDEDPTIFEITYRGNHTCT 193
                      59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28127193IPR003657WRKY domain
PROSITE profilePS5081123.227127195IPR003657WRKY domain
SuperFamilySSF1182904.84E-26130194IPR003657WRKY domain
SMARTSM007741.8E-41132194IPR003657WRKY domain
PfamPF031061.3E-27133192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGDSKNLIDE LLHGLELARQ LQIYLNVSSS SNETREILIQ KIISTFEKAL EMVNRKRHVN  60
MGESSKQQYP SASGTLAIRI SDSPPLSCSP RSEDSDRDFN RDHNASRKRN TLPIRWTKHI  120
RVEPGMAMEG PLDDGYSWRK YGQKDILGAM HPRGYYRCTH RNVLGCLATK QVQRSDEDPT  180
IFEITYRGNH TCTIASNVVG PTLNNPFQTQ ETNIVNTNPQ SLDQQKPPNE QLLNNLRTGL  240
RVQTENLDFQ NQSFVPFGNH VLESSFAENF NSPSYVSPAN SGISHFSMSP TPSVFPNMAS  300
EIIPPATSAA NTPTASMEFP FDQFEFDGQN FTFHNSRFFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-20132192868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.73940.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g090860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5260360.0EU526036.1 Medicago truncatula WRKY transcription factor WRKY109669 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602195.10.0probable WRKY transcription factor 41
TrEMBLB3U3990.0B3U399_MEDTR; Putative transcription factor WRKY family
STRINGAES724460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-50WRKY family protein
Publications ? help Back to Top
  1. Naoumkina MA,He X,Dixon RA
    Elicitor-induced transcription factors for metabolic reprogramming of secondary metabolism in Medicago truncatula.
    BMC Plant Biol., 2008. 8: p. 132
    [PMID:19102779]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]